Test suite

Test scripts and sanity checks

We have developed a set of scripts for testing the various features of MetAMOS. All of these regression test scripts are available inside the /Test directory and include all necessary datasets to run them. Here is a brief listing of the test scripts we currently include:

Test initPipeline


Test runPipeline


Test Preprocess filtration of non-interleaved fastq files


Test iMetAMOS


Test SRA download


Test Newbler (if available)


Test CA (fasta)


Test CA (fastq)


Test SOAPdenovo


Test MetaVelvet


Test SparseAssembler


Test Velvet


Test FCP


Test Spades