MetAMOS: a modular framework for (meta)genomic assembly, analysis and validation¶
Overview¶
MetAMOS represents a focused effort to create automated, reproducible, traceable assembly & analysis infused with current best practices and state-of-the-art methods. MetAMOS for input can start with next-generation sequencing reads or assemblies, and as output, produces: assembly reports, genomic scaffolds, open-reading frames, variant motifs, taxonomic or functional annotations, Krona charts and HTML report.
Citation¶
If you use MetAMOS in your research, please cite the following manuscript (in addition to the individual software component citations listed in stdout):
TJ Treangen, S Koren, DD Sommer, B Liu, I Astrovskaya, B Ondov, Irina Astrovskaya, Brian Ondov, Aaron E Darling, Adam M Phillippy, Mihai Pop
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
Genome Biology 14 (1), R2
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