Test suite¶
Test scripts and sanity checks¶
We have developed a set of scripts for testing the various features of MetAMOS. All of these regression test scripts are available inside the /Test directory and include all necessary datasets to run them. Here is a brief listing of the test scripts we currently include:
Test initPipeline¶
./Test/test_create.sh
Test runPipeline¶
./Test/run_test.sh
Test Preprocess filtration of non-interleaved fastq files¶
./Test/test_filter_noninterleaved_fastq.sh
Test iMetAMOS¶
./Test/test_ima.sh
Test SRA download¶
./Test/test_sra.sh
Test Newbler (if available)¶
./Test/test_newbler.sh
Test CA (fasta)¶
./Test/test_ca_fasta.sh
Test CA (fastq)¶
./Test/test_ca.sh
Test SOAPdenovo¶
./Test/test_soap.sh
Test MetaVelvet¶
./Test/test_metavelvet.sh
Test SparseAssembler¶
./Test/test_sparse.sh
Test Velvet¶
./Test/test_velvet.sh
Test FCP¶
./Test/test_fcp.sh
Test Spades¶
./Test/test_spades.sh
Test BLAST¶
./Test/test_blast.sh